PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G101500.1.p
Common NameGLYMA_15G101500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 764aa    MW: 88471.1 Da    PI: 6.8408
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G101500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.21.5e-1943117189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          kfY +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rt+C a ++v+ + +gkw+v++++++HnH+l
  Glyma.15G101500.1.p  43 KFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLS--------------SRTDCPAFIRVQINGSGKWVVDHFHKDHNHNL 117
                          6**************************************8765..............5899**************************99 PP

2FAR162.99.5e-20199274190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA ++GF vr+ +  +sk++g it+r+fvCskeg++++               r+gC a l++k++ +gkw v++l+++HnH+l 
  Glyma.15G101500.1.p 199 QFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------LRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLD 274
                          6***************************************998..............4899**************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1543117IPR004330FAR1 DNA binding domain
PfamPF031018.2E-16199274IPR004330FAR1 DNA binding domain
PfamPF105513.4E-27373466IPR018289MULE transposase domain
PROSITE profilePS5096610.336648684IPR007527Zinc finger, SWIM-type
PfamPF044344.5E-8657681IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-6659686IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MIVNEHSVGT ELAMNNASVE EEIDFSCDPY IGLEFDTADE ALKFYTSYAN RTGFKVRIGQ  60
LYRSRTDGSV SSRRFVCSKE GHQLSSRTDC PAFIRVQING SGKWVVDHFH KDHNHNLEIS  120
GENCSPTLQQ KGAGATVINS LTEFPRRPRR KLLEEANDES SCPFGIIDFK RLRKEELEGQ  180
SRTEPYVGQE FISPDEAYQF YHAYAAHLGF GVRIGQLFRS KNDGLITSRR FVCSKEGFQH  240
PLRVGCGAYL RIKRQPSGKW TVDRLRKDHN HDLDSEKEGR AKSLPASNIL AEEVDTGLVN  300
YDLFRRDNYP VPRGGRQNHI RSEWYGILLE YFQSRQAEDT GFFYAVEVDY GNCMNIFWAD  360
GRSRYSCSQF GDVLVLDTSY RKTVYLVPFA TFVGVNHHKQ PVLLGCALIA DESEESFTWL  420
FQTWLRAMSG RLPLTVIADQ DIAIQRAIAK VFPVTHHRFS LWQIKAKEQE NMGLMGNDFT  480
KDYENCVYQS QTVDEFDATW NVVLNKYGLK DNAWLKEMYE KRESWVPLYL KGTFFAGIPM  540
NESLDSFFGA LLNAQTPLME FIPRYERGLE QRREEERKED FNTSNFQPIL QTKEPVEEQF  600
RKLYTLTVFK IFQKELLQCF SYLGFKIFEE GGLSRYMVRR CGNDMEKHVV TFNASNISIS  660
CSCQMFEYEG VLCRHVLRVF QILQLREVPC RYILHRWTRN TEDGVFPDME SWSSSQELKN  720
LMLWSLRETA SKYIDAGATS IEKYKLAYEI LREGGRKLCW HSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150RPRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.38230.0root| seed coat
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597564.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A0R0FYT30.0A0A0R0FYT3_SOYBN; Uncharacterized protein
STRINGGLYMA15G10830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7